INFO: No output directory specified (--dir)
INFO: Using directory: "Tomography_20261030_041036"
INFO: Regenerating c-file: Tomography.c
DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/bin/mcstas  -t -o ./Tomography.c Tomography.instr --verbose
mcstas version 3.99.99
Analyzing file            Tomography.instr
Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/share/mcstas/resources/misc/Progress_bar.comp
Component[1]: Origin = Progress_bar().
Embedding component Source_div from file /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/share/mcstas/resources/sources/Source_div.comp
Component[2]: source = Source_div().
Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/share/mcstas/resources/optics/Arm.comp
Component[3]: samplearm = Arm().
Embedding library   read_table-lib.h
Embedding library   read_table-lib.c
Embedding library   interoff-lib.h
Embedding library   interoff-lib.c
Embedding component Incoherent from file /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/share/mcstas/resources/samples/Incoherent.comp
Component[4]: sample = Incoherent().
Embedding library   monitor_nd-lib.h
Embedding library   monitor_nd-lib.c
Embedding component Monitor_nD from file /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/share/mcstas/resources/monitors/Monitor_nD.comp
Component[5]: monitor = Monitor_nD().
Combine metadata blocks into table
Processed 0 metadata blocks
Creating instrument 'Tomography' (with 5 component instances)
Starting to create C code ./Tomography.c
Embedding file      mccode-r.h (user path)
Embedding file      mcstas-r.h (user path)
Compile            './Tomography.c -DUSE_NEXUS -lhdf5' to enable NeXus support
Embedding file      mccode-r.c (user path)
Embedding file      mcstas-r.c (user path)
Writing instrument 'Tomography' and components DECLARE
Writing instrument 'Tomography' and components INITIALISE
Writing components TRACE
Writing instrument 'Tomography' and components SAVE
Writing instrument 'Tomography' and components FINALLY
Writing instrument 'Tomography' and components DISPLAY
Embedding file      metadata-r.c (user path)
Embedding file      mccode_main.c (user path)
Warning: The build of the instrument 'Tomography' has 17 warnings/errors.
Generated          C code ./Tomography.c from Tomography.instr
CFLAGS=  -DUSE_OFF 

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Generating single GPU kernel or single CPU section layout: 

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Generating GPU/CPU -DFUNNEL layout:

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DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/bin/mcstas  finished
INFO: Recompiling: ./Tomography.out
DEBUG: CMD: mpicc -o ./Tomography.out ./Tomography.c -lm -I/u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/lib -DUSE_MPI -lmpi -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcstas-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -DUSE_OFF
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
DEBUG: CMD: mpicc finished
INFO: ===