INFO: No output directory specified (--dir)
INFO: Using directory: "Tomography_20241222_094206"
INFO: Regenerating c-file: Tomography.c
DEBUG: CMD: /u/data/pkwi/McStas/mcstas/3.x-dev/bin/mcstas-antlr -I$MCSTAS -t -o ./Tomography.c Tomography.instr
2024-12-22 09:42:23.008 | DEBUG    | mccode_antlr.translators.c:sort_include_hierarchy:41 - sort includes :Incoherent(0):read_table-lib :Incoherent(1):interoff-lib :Monitor_nD(0):monitor_nd-lib :Monitor_nD(1):read_table-lib :Monitor_nD(2):interoff-lib
2024-12-22 09:42:23.008 | DEBUG    | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to monitor_nd-lib  read_table-lib  interoff-lib
2024-12-22 09:42:23.009 | DEBUG    | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to read_table-lib  interoff-lib  monitor_nd-lib
No initialization present?

-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout:

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:
-> GPU kernel from component Origin
-> GPU kernel from component source
-> GPU kernel from component samplearm
-> GPU kernel from component sample
-> GPU kernel from component monitor

-----------------------------------------------------------
DEBUG: CMD: /u/data/pkwi/McStas/mcstas/3.x-dev/bin/mcstas-antlr -I$MCSTAS finished
INFO: Recompiling: ./Tomography.out
DEBUG: CMD: nvc -o ./Tomography.out ./Tomography.c -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/McStas/mcstas/3.x-dev/miniconda3/lib -Wl,-rpath-link,/u/data/pkwi/McStas/mcstas/3.x-dev/miniconda3/lib -L/u/data/pkwi/McStas/mcstas/3.x-dev/miniconda3/lib -mtune=haswell -fPIC -O2 -isystem /u/data/pkwi/McStas/mcstas/3.x-dev/miniconda3/include -fast -Minfo=accel -acc=gpu -gpu=managed -DOPENACC
"./Tomography.c", line 4490: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./Tomography.c", line 9614: warning: variable "dt" was set but never used [set_but_not_used]
  	double dt, dy;
  	       ^

"./Tomography.c", line 9614: warning: variable "dy" was set but never used [set_but_not_used]
  	double dt, dy;
  	           ^

"./Tomography.c", line 9641: warning: variable "dx" was set but never used [set_but_not_used]
  	double dx, dy;
  	       ^

"./Tomography.c", line 9641: warning: variable "dy" was set but never used [set_but_not_used]
  	double dx, dy;
  	           ^

"./Tomography.c", line 11183: warning: variable "minx" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
          ^

"./Tomography.c", line 11183: warning: variable "maxx" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                       ^

"./Tomography.c", line 11183: warning: variable "miny" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                     ^

"./Tomography.c", line 11183: warning: variable "maxy" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                  ^

"./Tomography.c", line 11183: warning: variable "minz" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                                ^

"./Tomography.c", line 11183: warning: variable "maxz" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                                             ^

"./Tomography.c", line 11540: warning: variable "plane_Eq" was declared but never referenced [declared_but_not_referenced]
    double plane_Eq [4];
           ^

"./Tomography.c", line 12450: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./Tomography.c", line 13453: warning: variable "l_i" was set but never used [set_but_not_used]
    double l_i, l_o=0;            /* Flight path lenght in/out for scattered neutron */
           ^

"./Tomography.c", line 13453: warning: variable "l_o" was declared but never referenced [declared_but_not_referenced]
    double l_i, l_o=0;            /* Flight path lenght in/out for scattered neutron */
                ^

"./Tomography.c", line 15083: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./Tomography.c", line 15084: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./Tomography.c", line 1498: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./Tomography.c", line 2901: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
     89, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
    103, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    136, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    161, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    184, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    196, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    205, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    216, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1545, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1549, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1558, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4111, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4542, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4553, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4562, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4574, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4586, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4596, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4606, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4614, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4624, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4646, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4653, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4699, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4734, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4745, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4762, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4773, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4789, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4818, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4829, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4833, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange:
   5010, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5041, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5058, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5157, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5241, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5307, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5384, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5656, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5666, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5692, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5733, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5744, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5749, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5757, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5765, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5772, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6429, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6525, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6542, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6657, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6712, Generating acc routine seq
         Generating NVIDIA GPU code
Monitor_nD_Trace:
   8595, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
  10440, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
  10508, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
  10587, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
  11055, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
  11071, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
  11089, Generating acc routine seq
         Generating NVIDIA GPU code
off_F:
  11140, Generating acc routine seq
         Generating NVIDIA GPU code
off_sign:
  11145, Generating acc routine seq
         Generating NVIDIA GPU code
off_normal:
  11155, Generating acc routine seq
         Generating NVIDIA GPU code
off_pnpoly:
  11181, Generating acc routine seq
         Generating NVIDIA GPU code
off_intersectPoly:
  11244, Generating acc routine seq
         Generating NVIDIA GPU code
off_init_planes:
  11375, Generating acc routine seq
         Generating NVIDIA GPU code
off_clip_3D_mod:
  11420, Generating acc routine seq
         Generating NVIDIA GPU code
off_clip_3D_mod_grav:
  11537, Generating acc routine seq
         Generating NVIDIA GPU code
off_compare:
  11655, Generating acc routine seq
         Generating NVIDIA GPU code
off_cleanDouble:
  11667, Generating acc routine seq
         Generating NVIDIA GPU code
off_cleanInOut:
  11702, Generating acc routine seq
         Generating NVIDIA GPU code
Min_int:
  11953, Generating acc routine seq
         Generating NVIDIA GPU code
merge:
  11960, Generating acc routine seq
         Generating NVIDIA GPU code
p_to_quadratic:
  12064, Generating implicit acc routine seq
         Generating acc routine seq
         Generating NVIDIA GPU code
quadraticSolve:
  12079, Generating implicit acc routine seq
         Generating acc routine seq
         Generating NVIDIA GPU code
off_intersect_all:
  12133, Generating acc routine seq
         Generating NVIDIA GPU code
off_intersect:
  12250, Generating acc routine seq
         Generating NVIDIA GPU code
off_x_intersect:
  12272, Generating acc routine seq
         Generating NVIDIA GPU code
init:
  13183, Generating update device(_source_var,_samplearm_var,_sample_var,_monitor_var,_instrument_var,_Origin_var)
class_Progress_bar_trace:
  13224, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_div_trace:
  13314, Generating acc routine seq
         Generating NVIDIA GPU code
class_Incoherent_trace:
  13413, Generating acc routine seq
         Generating NVIDIA GPU code
  13610, Reference argument passing prevents parallelization: solid_angle
  13613, Reference argument passing prevents parallelization: solid_angle
class_Monitor_nD_trace:
  13712, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace:
  14008, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all:
  14152, Generating implicit firstprivate(gpu_innerloop)
         Generating NVIDIA GPU code
      14166, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */
  14152, Local memory used for .inl_particle_12376,particleN,.inl_.inl_mcneutron_0_12391,.inl_.X2064_12393,.inl_.inl_.X2266_15_12392
  14166, Generating implicit firstprivate(seed,_particle)
finally:
  14602, Generating update self(_source_var,_samplearm_var,_sample_var,_monitor_var,_instrument_var,_Origin_var)
mcenabletrace:
   5891, Generating update device(mcdotrace)
/u/data/pkwi/McStas/mcstas/3.x-dev/tools/../miniconda3/bin//ld: warning: /tmp/pgcudafatcbakhgld__HPR.o: missing .note.GNU-stack section implies executable stack
/u/data/pkwi/McStas/mcstas/3.x-dev/tools/../miniconda3/bin//ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker
DEBUG: CMD: nvc finished
INFO: ===