INFO: Using directory: "1"
INFO: Using existing c-file: ./Single_crystal_validation.c
INFO: Using existing binary: ./Single_crystal_validation.out
INFO: ===
Opening input file '/Users/peterwillendrup/miniforge3/share/mcstas/resources/data/YBaCuO.lau' (Table_Read_Offset)
Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211
Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau'
Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau
[Single_crystal_validation] Initialize
---------------------------------------------------------------------
global_process_list_master->num_elements: 2
name of process [0]: Single_crystal_test_process 
component index [0]: 2 
name of process [1]: Incoherent_process 
component index [1]: 3 
---------------------------------------------------------------------
global_material_list_master->num_elements: 1
name of material    [0]: test_material 
component index     [0]: 4 
my_absoprtion       [0]: 8.550000 
number of processes [0]: 2 
---------------------------------------------------------------------
global_geometry_list_master->num_elements: 1

name of geometry    [0]: cylinder_sample_union 
component index     [0]: 8 
Volume.name         [0]: cylinder_sample_union 
Volume.p_physics.is_vacuum           [0]: 0 
Volume.p_physics.my_absorption       [0]: 8.550000 
Volume.p_physics.number of processes [0]: 2 
Volume.geometry.shape                [0]: cylinder 
Volume.geometry.center.x             [0]: 0.000000 
Volume.geometry.center.y             [0]: 0.000000 
Volume.geometry.center.z             [0]: 5.100000 
Volume.geometry.rotation_matrix[0]           [0]: [1.000000 0.000000 0.000000] 
Volume.geometry.rotation_matrix[1]           [0]: [0.000000 1.000000 0.000000] 
Volume.geometry.rotation_matrix[2]           [0]: [0.000000 0.000000 1.000000] 
Volume.geometry.geometry_parameters.cyl_radius [0]: 0.010000 
Volume.geometry.geometry_parameters.height [0]: 0.010000 
Volume.geometry.focus_data_array.elements[0].Aim             [0]: [0.000000 0.000000 1.000000] 
---------------------------------------------------------------------
number_of_volumes = 2
number_of_masks = 0
number_of_masked_volumes = 0

 ---- Overview of the lists generated for each volume ---- 
List overview for surrounding vacuum
LIST: Children for Volume                  0 = [1]
LIST: Direct_children for Volume           0 = [1]
LIST: Intersect_check_list for Volume      0 = [1]
LIST: Mask_intersect_list for Volume       0 = []
LIST: Destinations_list for Volume         0 = []
LIST: Reduced_destinations_list for Volume 0 = []
LIST: Next_volume_list for Volume          0 = [1]
LIST: mask_list for Volume                 0 = []
LIST: masked_by_list for Volume            0 = []
LIST: masked_by_mask_index_list for Volume 0 = []
      mask_mode for Volume                 0 = 0

List overview for cylinder_sample_union with cylinder shape made of test_material
LIST: Children for Volume                  1 = []
LIST: Direct_children for Volume           1 = []
LIST: Intersect_check_list for Volume      1 = []
LIST: Mask_intersect_list for Volume       1 = []
LIST: Destinations_list for Volume         1 = [0]
LIST: Reduced_destinations_list for Volume 1 = []
LIST: Next_volume_list for Volume          1 = [0]
      Is_vacuum for Volume                 1 = 0
      is_mask_volume for Volume            1 = 0
      is_masked_volume for Volume          1 = 0
      is_exit_volume for Volume            1 = 0
LIST: mask_list for Volume                 1 = []
LIST: masked_by_list for Volume            1 = []
LIST: masked_by_mask_index_list for Volume 1 = []
      mask_mode for Volume                 1 = 0

Union_master component test_sample initialized sucessfully
Opening input file '/Users/peterwillendrup/miniforge3/share/mcstas/resources/data/YBaCuO.lau' (Table_Read_Offset)
Mode: Direct mode lattice
Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211
Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau'
Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau
Direct space lattice orientation:
  a = [3.8186 0 0]
  b = [0 3.8843 0]
  c = [0 0 11.6777]
Reciprocal space lattice orientation:
  a* = [1.64542 0 0]
  b* = [0 1.61758 0]
  c* = [0 0 0.53805]
*** TRACE end *** 

Save [Single_crystal_validation]
Detector: Union_logger_2DQ_crystal_I=4.28744e+08 Union_logger_2DQ_crystal_ERR=419555 Union_logger_2DQ_crystal_N=1.66293e+06 "Union_logger_2DQ_crystal.dat"
Detector: Union_logger_2DQ_incoherent_I=8.35509e+06 Union_logger_2DQ_incoherent_ERR=16111.2 Union_logger_2DQ_incoherent_N=569486 "Union_logger_2DQ_incoherent.dat"
Detector: det_I=1.4435e+07 det_ERR=57107.3 det_N=465548 "psd.dat"
Detector: Banana_monitor_I=983164 Banana_monitor_ERR=17881.1 Banana_monitor_N=11385 "banana.dat"
Detector: PSDlin_transmission_scattered_I=808705 PSDlin_transmission_scattered_ERR=16630.9 PSDlin_transmission_scattered_N=2844 "Output_transmission_lin_scattered.psd"
Detector: PSDlin_transmission_transmitted_I=2.28049e+08 PSDlin_transmission_transmitted_ERR=338568 PSDlin_transmission_transmitted_N=453697 "Output_transmission_lin_transmitted.psd"

Finally [Single_crystal_validation: 1]. Time: 1 [s] 
INFO: Placing instr file copy Single_crystal_validation.instr in dataset 1
INFO: Placing generated c-code copy Single_crystal_validation.c in dataset 1