INFO: Using directory: "2" INFO: Using existing c-file: ./Single_crystal_validation.c INFO: Using existing binary: ./Single_crystal_validation.out INFO: === Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Simulation 'Single_crystal_validation' (Single_crystal_validation.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Opening input file '/home/nexmap/pkwi/McStas/mcstas/3.x-dev/data/YBaCuO.lau' (Table_Read_Offset) Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize --------------------------------------------------------------------- global_process_list_master->num_elements: 2 name of process [0]: Single_crystal_test_process component index [0]: 2 name of process [1]: Incoherent_process component index [1]: 3 --------------------------------------------------------------------- global_material_list_master->num_elements: 1 name of material [0]: test_material component index [0]: 4 my_absoprtion [0]: 8.550000 number of processes [0]: 2 --------------------------------------------------------------------- global_geometry_list_master->num_elements: 1 name of geometry [0]: cylinder_sample_union component index [0]: 8 Volume.name [0]: cylinder_sample_union Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absorption [0]: 8.550000 Volume.p_physics.number of processes [0]: 2 Volume.geometry.shape [0]: cylinder Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 5.100000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.geometry_parameters.cyl_radius [0]: 0.010000 Volume.geometry.geometry_parameters.height [0]: 0.010000 Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 2 number_of_masks = 0 number_of_masked_volumes = 0 ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1] LIST: Direct_children for Volume 0 = [1] LIST: Intersect_check_list for Volume 0 = [1] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for cylinder_sample_union with cylinder shape made of test_material LIST: Children for Volume 1 = [] LIST: Direct_children for Volume 1 = [] LIST: Intersect_check_list for Volume 1 = [] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 Union_master component test_sample initialized sucessfully Opening input file '/home/nexmap/pkwi/McStas/mcstas/3.x-dev/data/YBaCuO.lau' (Table_Read_Offset) Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] *** TRACE end *** Save [Single_crystal_validation] Detector: Union_logger_2DQ_crystal_I=4.33544e+08 Union_logger_2DQ_crystal_ERR=174703 Union_logger_2DQ_crystal_N=1.63439e+07 "Union_logger_2DQ_crystal.dat" Detector: Union_logger_2DQ_incoherent_I=8.35491e+06 Union_logger_2DQ_incoherent_ERR=5105.85 Union_logger_2DQ_incoherent_N=5.69737e+06 "Union_logger_2DQ_incoherent.dat" Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Detector: det_I=1.44433e+07 det_ERR=18900.2 det_N=4.65626e+06 "psd.dat" Detector: Banana_monitor_I=975845 Banana_monitor_ERR=7705.6 Banana_monitor_N=111196 "banana.dat" Detector: PSDlin_transmission_scattered_I=800420 PSDlin_transmission_scattered_ERR=5231.22 PSDlin_transmission_scattered_N=28282 "Output_transmission_lin_scattered.psd" Detector: PSDlin_transmission_transmitted_I=2.27984e+08 PSDlin_transmission_transmitted_ERR=107049 PSDlin_transmission_transmitted_N=4.53568e+06 "Output_transmission_lin_transmitted.psd" Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] Finally [Single_crystal_validation: 2]. Time: 2 [s] munmap_chunk(): invalid pointer # Last I/O Error: Numerical result out of range # McStas 3.x-dev - May. 13, 2025: [pid 1591161] Signal 6 detected [proc 0] SIGABRT (Abort) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Simulation stop (abort). corrupted size vs. prev_size # Last I/O Error: Numerical result out of range corrupted size vs. prev_size # Last I/O Error: Numerical result out of range corrupted size vs. prev_size # Last I/O Error: Numerical result out of range corrupted size vs. prev_size # Last I/O Error: Numerical result out of range [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,8] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,14] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce # McStas 3.x-dev - May. 13, 2025: [pid 1591167] Signal 6 detected [proc 6] SIGABRT (Abort) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Simulation stop (abort). # McStas 3.x-dev - May. 13, 2025: [pid 1591164] Signal 6 detected [proc 3] SIGABRT (Abort) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Simulation stop (abort). # McStas 3.x-dev - May. 13, 2025: [pid 1591163] Signal 6 detected [proc 2] SIGABRT (Abort) [elearn1:00000] *** reported by process [724107265,10] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,15] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,12] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Simulation stop (abort). # McStas 3.x-dev - May. 13, 2025: [pid 1591170] Signal 6 detected [proc 9] SIGABRT (Abort) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Simulation stop (abort). # McStas 3.x-dev - May. 13, 2025: [pid 1591165] Signal 15 detected [proc 4] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) [elearn1:00000] *** reported by process [724107265,13] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,1] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,4] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591162] Signal 15 detected [proc 1] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591166] Signal 15 detected [proc 5] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) [elearn1:00000] *** reported by process [724107265,7] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,5] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) [elearn1:00000] *** An error occurred in MPI_Allreduce [elearn1:00000] *** reported by process [724107265,11] [elearn1:00000] *** on a NULL communicator [elearn1:00000] *** Unknown error [elearn1:00000] *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, [elearn1:00000] *** and MPI will try to terminate your MPI job as well) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591168] Signal 15 detected [proc 7] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591169] Signal 15 detected [proc 8] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591171] Signal 15 detected [proc 10] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591173] Signal 15 detected [proc 12] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591175] Signal 15 detected [proc 14] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591172] Signal 15 detected [proc 11] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591174] Signal 15 detected [proc 13] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) # McStas 3.x-dev - May. 13, 2025: [pid 1591176] Signal 15 detected [proc 15] SIGTERM (Termination) # Simulation: Single_crystal_validation (Single_crystal_validation.instr) # Breakpoint: [_PSDlin_transmission_scattered_finally] component PSDlin_transmission_scattered=PSDlin_monitor() FINALLY [PSDlin_monitor:0] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 03:06:27 2025 # Started: Wed May 14 03:06:25 2025 # McStas 3.x-dev - May. 13, 2025: Finishing simulation (save results and exit) -------------------------------------------------------------------------- prterun noticed that process rank 0 with PID 1591161 on node elearn1 exited on signal 3 (Quit). -------------------------------------------------------------------------- INFO: call to mpirun failed with Command 'mpirun -np 16 ./Single_crystal_validation.out --trace=0 --seed=1000 --ncount=10000000.0 --dir=2 --format=NeXus --bufsiz=10000000 comp_select=1' returned non-zero exit status 131. Traceback (most recent call last): File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mcrun.py", line 616, in main() File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mcrun.py", line 588, in main mcstas.run() # in mccode.py ^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 347, in run return self.runMPI(args, pipe, override_mpi) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 401, in runMPI return Process(binpath).run(args, pipe=pipe) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 77, in run raise err File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 73, in run proc = run(command, shell=True, check=True, text=True, capture_output=pipe) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/miniconda3/lib/python3.12/subprocess.py", line 571, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command 'mpirun -np 16 ./Single_crystal_validation.out --trace=0 --seed=1000 --ncount=10000000.0 --dir=2 --format=NeXus --bufsiz=10000000 comp_select=1' returned non-zero exit status 131.