INFO: Using directory: "3" INFO: Using existing c-file: ./Single_crystal_validation.c INFO: Using existing binary: ./Single_crystal_validation.out INFO: === Simulation 'Single_crystal_validation' (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Opening input file '/home/nexmap/pkwi/McStas/mcstas/3.x-dev/data/YBaCuO.lau' (Table_Read_Offset) Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize --------------------------------------------------------------------- global_process_list_master->num_elements: 2 name of process [0]: Single_crystal_test_process component index [0]: 2 name of process [1]: Incoherent_process component index [1]: 3 --------------------------------------------------------------------- global_material_list_master->num_elements: 1 name of material [0]: test_material component index [0]: 4 my_absoprtion [0]: 8.550000 number of processes [0]: 2 --------------------------------------------------------------------- global_geometry_list_master->num_elements: 1 name of geometry [0]: cylinder_sample_union component index [0]: 8 Volume.name [0]: cylinder_sample_union Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absorption [0]: 8.550000 Volume.p_physics.number of processes [0]: 2 Volume.geometry.shape [0]: cylinder Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 5.100000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.geometry_parameters.cyl_radius [0]: 0.010000 Volume.geometry.geometry_parameters.height [0]: 0.010000 Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 2 number_of_masks = 0 number_of_masked_volumes = 0 ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1] LIST: Direct_children for Volume 0 = [1] LIST: Intersect_check_list for Volume 0 = [1] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for cylinder_sample_union with cylinder shape made of test_material LIST: Children for Volume 1 = [] LIST: Direct_children for Volume 1 = [] LIST: Intersect_check_list for Volume 1 = [] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 Union_master component test_sample initialized sucessfully Opening input file '/home/nexmap/pkwi/McStas/mcstas/3.x-dev/data/YBaCuO.lau' (Table_Read_Offset) Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space laSingle_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: Single_crystal_test_process: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: Single_crystal_test_process: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Single_crystal_validation] Initialize Mode: Direct mode lattice Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal: sample: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: sample: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Direct space lattice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] ttice orientation: a = [3.8186 0 0] b = [0 3.8843 0] c = [0 0 11.6777] Reciprocal space lattice orientation: a* = [1.64542 0 0] b* = [0 1.61758 0] c* = [0 0 0.53805] *** TRACE end *** Save [Single_crystal_validation] Detector: Union_logger_2DQ_crystal_I=0 Union_logger_2DQ_crystal_ERR=0 Union_logger_2DQ_crystal_N=0 "Union_logger_2DQ_crystal.dat" Detector: Union_logger_2DQ_incoherent_I=0 Union_logger_2DQ_incoherent_ERR=0 Union_logger_2DQ_incoherent_N=0 "Union_logger_2DQ_incoherent.dat" Detector: det_I=1.44379e+07 det_ERR=17389.5 det_N=9.73719e+06 "psd.dat" Detector: Banana_monitor_I=979972 Banana_monitor_ERR=5705.92 Banana_monitor_N=222622 "banana.dat" Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Detector: PSDlin_transmission_scattered_I=794845 PSDlin_transmission_scattered_ERR=5030.4 PSDlin_transmission_scattered_N=38403 "Output_transmission_lin_scattered.psd" Detector: PSDlin_transmission_transmitted_I=2.32675e+08 PSDlin_transmission_transmitted_ERR=2.57521e+06 PSDlin_transmission_transmitted_N=8845 "Output_transmission_lin_transmitted.psd" Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] Finally [Single_crystal_validation: 3]. Time: 2 [s] corrupted size vs. prev_size corrupted size vs. prev_size # Last I/O Error: No such file or directory # Last I/O Error: Numerical result out of range # McStas: [pid 2791055] Signal 6 detected [proc 0] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791062] Signal 6 detected [proc 7] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). corrupted size vs. prev_size # Last I/O Error: Numerical result out of range # McStas: [pid 2791064] Signal 6 detected [proc 9] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer # McStas: [pid 2791067] Signal 6 detected [proc 12] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: [pid 2791068] Signal 6 detected [proc 13] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791066] Signal 6 detected [proc 11] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791070] Signal 6 detected [proc 15] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791069] Signal 6 detected [proc 14] SIGABRT (Abort) munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791065] Signal 6 detected [proc 10] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791063] Signal 6 detected [proc 8] SIGABRT (Abort) # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: Simulation stop (abort). # McStas: [pid 2791060] Signal 6 detected [proc 5] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: [pid 2791059] Signal 6 detected [proc 4] SIGABRT (Abort) # Last I/O Error: Bad file descriptor # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: [pid 2791056] Signal 6 detected [proc 1] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # McStas: Simulation stop (abort). munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer munmap_chunk(): invalid pointer # McStas: [pid 2791061] Signal 6 detected [proc 6] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # McStas: [pid 2791058] Signal 6 detected [proc 3] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: [pid 2791057] Signal 6 detected [proc 2] SIGABRT (Abort) # Simulation: Single_crystal_validation (/home/nexmap/pkwi/TESTS/2025-05-14/ANTLR_mpi_x_16_1e7_Linux_1e7/Single_crystal_validation/Single_crystal_validation.instr) # Breakpoint: [_PSDlin_monitor_finally] component NULL=PSDlin_monitor() [/home/nexmap/pkwi/McStas/mcstas/3.x-dev/monitors/PSDlin_monitor.comp:127] 0.00 % ( 0.0/ 625000.0) # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # Date: Wed May 14 09:34:30 2025 # Started: Wed May 14 09:34:28 2025 # McStas: Simulation stop (abort). # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # Last I/O Error: Bad file descriptor # McStas: Simulation stop (abort). -------------------------------------------------------------------------- prterun noticed that process rank 0 with PID 2791055 on node elearn1 exited on signal 3 (Quit). -------------------------------------------------------------------------- INFO: call to mpirun failed with Command 'mpirun -np 16 ./Single_crystal_validation.out --trace=0 --seed=1000 --ncount=10000000.0 --dir=3 --format=McCode --bufsiz=10000000 comp_select=2' returned non-zero exit status 131. Traceback (most recent call last): File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mcrun.py", line 616, in main() File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mcrun.py", line 588, in main mcstas.run() # in mccode.py ^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 347, in run return self.runMPI(args, pipe, override_mpi) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 401, in runMPI return Process(binpath).run(args, pipe=pipe) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 77, in run raise err File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/mccode.py", line 73, in run proc = run(command, shell=True, check=True, text=True, capture_output=pipe) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McStas/mcstas/3.x-dev/miniconda3/lib/python3.12/subprocess.py", line 571, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command 'mpirun -np 16 ./Single_crystal_validation.out --trace=0 --seed=1000 --ncount=10000000.0 --dir=3 --format=McCode --bufsiz=10000000 comp_select=2' returned non-zero exit status 131.