loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas-2.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Union_laue_camera.c INFO: Using existing binary: ./Union_laue_camera.out INFO: === Simulation 'Union_laue_camera' (/home/nexmap/pkwi/TESTS/2023-12-20/McStas-2.x_CPU_MPICC_5e7/Union_laue_camera/Union_laue_camera.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). Opening input file '/home/nexmap/pkwi/McStas/mcstas/2.x-dev/tools/Python/mcrun/../mccodelib/../../../data/YBaCuO.lau' (Table_Read_Offset) Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize [Union_laue_camera] Initialize [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 --------------------------------------------------------------------- global_process_list.num_elements: 2 name of process [0]: YBaCuO_incoherent component index [0]: 1 name of process [1]: YBaCuO_single_crystal component index [1]: 4 --------------------------------------------------------------------- global_material_list.num_elements: 1 name of material [0]: YBaCuO component index [0]: 5 my_absoprtion [0]: 8.076187 number of processes [0]: 2 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize --------------------------------------------------------------------- global_geometry_list.num_elements: 1 name of geometry [0]: cylinder_sample_union component index [0]: 9 Volume.name [0]: cylinder_sample_union Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absorption [0]: 8.076187 Volume.p_physics.number of processes [0]: 2 Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Volume.geometry.shape [0]: cylinder Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 5.100000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.geometry_parameters.cyl_radius [0]: 0.010000 Volume.geometry.geometry_parameters.height [0]: 0.010000 Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 2 number_of_masks = 0 number_of_masked_volumes = 0 Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1] LIST: Direct_children for Volume 0 = [1] LIST: Intersect_check_list for Volume 0 = [1] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for cylinder_sample_union with cylinder shape made of YBaCuO Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize LIST: Children for Volume 1 = [] LIST: Direct_children for Volume 1 = [] LIST: Intersect_check_list for Volume 1 = [] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 Union_master component test_sample initialized sucessfully Single_crystal: YBaCuO.lau structure a=[3.8186,0,0] b=[0,3.8843,0] c=[0,0,11.6777] V0=173.211 Single_crystal_process: YBaCuO_single_crystal: Read 62 reflections from file 'YBaCuO.lau' Single_crystal: YBaCuO_single_crystal: Vc=173.211 [Angs] sigma_abs=14.82 [barn] sigma_inc=2.105 [barn] reflections=YBaCuO.lau [Union_laue_camera] Initialize Warning: 688526 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 687242 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 688544 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 687932 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 688199 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Save [Union_laue_camera] Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 688314 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 687282 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 687676 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 688259 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 687190 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 688054 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 688491 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 687642 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_laue_camera: 1]. Time: 8 [s] Finally [Union_laue_camera: 1]. Time: 8 [s] Warning: 688284 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 687582 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Detector: det_I=2.08603e+07 det_ERR=45217.2 det_N=2.30279e+07 "psd.dat" Detector: Banana_monitor_I=1.73232e+06 Banana_monitor_ERR=8085.15 Banana_monitor_N=630679 "banana.dat" Detector: PSDlin_transmission_scattered_I=1.03724e+06 PSDlin_transmission_scattered_ERR=3797.75 PSDlin_transmission_scattered_N=218253 "Output_transmission_lin_scattered.psd" Detector: PSDlin_transmission_transmitted_I=2.30323e+08 PSDlin_transmission_transmitted_ERR=48118.9 PSDlin_transmission_transmitted_N=2.2911e+07 "Output_transmission_lin_transmitted.psd" Finally [Union_laue_camera: 1]. Time: 9 [s] Warning: 687564 events were removed in Component[13] PSDlin_transmission_scattered=PSDlin_monitor() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /home/nexmap/pkwi/TESTS/2023-12-20/McStas-2.x_CPU_MPICC_5e7/Union_laue_camera/Union_laue_camera.instr in dataset 1