INFO: No output directory specified (--dir) INFO: Using directory: "Tomography_20250506_032402" INFO: Regenerating c-file: Tomography.c DEBUG: CMD: /home/runner/work/McCode/McCode/install_mcstas/bin/mcstas -t -o ./Tomography.c Tomography.instr CFLAGS= -DUSE_OFF ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- DEBUG: CMD: /home/runner/work/McCode/McCode/install_mcstas/bin/mcstas finished INFO: Recompiling: ./Tomography.out DEBUG: CMD: mpicc -o ./Tomography.out ./Tomography.c -lm -DUSE_MPI -lmpi -O2 -g -DNDEBUG -I${CONDA_PREFIX}/include -Wl,-rpath,${CONDA_PREFIX}/lib -L${CONDA_PREFIX}/lib -fno-PIC -fPIE -O3 -mtune=native -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -DUSE_OFF ./Tomography.c: In function ‘detector_import’: ./Tomography.c:2474:57: warning: ‘ ’ directive output may be truncated writing 1 byte into a region of size between 0 and 1023 [-Wformat-truncation=] 2474 | snprintf(detector.variables, CHAR_BUF_LENGTH, "%s %s %s_err N", detector.xvar, c, c); | ^ In file included from /usr/include/stdio.h:980, from ./Tomography.c:272: In function ‘snprintf’, inlined from ‘detector_import’ at ./Tomography.c:2474:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: ‘__builtin___snprintf_chk’ output 9 or more bytes (assuming 1032) into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘Open_File’: ./Tomography.c:7277:41: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 7277 | snprintf(path, 1024, "%s%c%s", dir, MC_PATHSEP_C, File); | ^ In function ‘snprintf’, inlined from ‘Open_File’ at ./Tomography.c:7277:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: ‘__builtin___snprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘Open_File’: ./Tomography.c:7292:41: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 7292 | snprintf(path, 1024, "%s%c%s", dir, MC_PATHSEP_C, File); | ^ In function ‘snprintf’, inlined from ‘Open_File’ at ./Tomography.c:7292:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: ‘__builtin___snprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘Open_File’: ./Tomography.c:7300:37: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 7300 | snprintf(path, 1024, "%s%c%s", dir, MC_PATHSEP_C, File); | ^ In function ‘snprintf’, inlined from ‘Open_File’ at ./Tomography.c:7300:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: ‘__builtin___snprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘Open_File’: ./Tomography.c:7306:35: warning: ‘%s’ directive output may be truncated writing 4 bytes into a region of size between 0 and 1023 [-Wformat-truncation=] 7306 | snprintf(path, 1024, "%s%c%s%c%s", dir, MC_PATHSEP_C, "data", MC_PATHSEP_C, File); | ^~ ~~~~~~ In function ‘snprintf’, inlined from ‘Open_File’ at ./Tomography.c:7306:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: ‘__builtin___snprintf_chk’ output 7 or more bytes (assuming 1030) into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘Open_File’: ./Tomography.c:7312:35: warning: ‘%s’ directive output may be truncated writing 7 bytes into a region of size between 0 and 1023 [-Wformat-truncation=] 7312 | snprintf(path, 1024, "%s%c%s%c%s", dir, MC_PATHSEP_C, "contrib", MC_PATHSEP_C, File); | ^~ ~~~~~~~~~ In function ‘snprintf’, inlined from ‘Open_File’ at ./Tomography.c:7312:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: ‘__builtin___snprintf_chk’ output 10 or more bytes (assuming 1033) into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘off_display’: ./Tomography.c:9989:37: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 9989 | sprintf(pixelinfotmp, "%s,%g,%g,%g", pixelinfo, x2-cmx, y2-cmy, z2-cmz); | ^~ ./Tomography.c:9989:33: note: assuming directive output of 12 bytes 9989 | sprintf(pixelinfotmp, "%s,%g,%g,%g", pixelinfo, x2-cmx, y2-cmy, z2-cmz); | ^~~~~~~~~~~~~ ./Tomography.c:9989:33: note: assuming directive output of 12 bytes ./Tomography.c:9989:33: note: assuming directive output of 12 bytes In function ‘sprintf’, inlined from ‘off_display’ at ./Tomography.c:9989:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 7 and 1066 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘off_display’: ./Tomography.c:9989:37: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 9989 | sprintf(pixelinfotmp, "%s,%g,%g,%g", pixelinfo, x2-cmx, y2-cmy, z2-cmz); | ^~ ./Tomography.c:9989:33: note: assuming directive output of 12 bytes 9989 | sprintf(pixelinfotmp, "%s,%g,%g,%g", pixelinfo, x2-cmx, y2-cmy, z2-cmz); | ^~~~~~~~~~~~~ ./Tomography.c:9989:33: note: assuming directive output of 12 bytes ./Tomography.c:9989:33: note: assuming directive output of 12 bytes In function ‘sprintf’, inlined from ‘off_display’ at ./Tomography.c:9989:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 7 and 1066 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘off_display’: ./Tomography.c:9989:37: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 9989 | sprintf(pixelinfotmp, "%s,%g,%g,%g", pixelinfo, x2-cmx, y2-cmy, z2-cmz); | ^~ ./Tomography.c:9989:33: note: assuming directive output of 12 bytes 9989 | sprintf(pixelinfotmp, "%s,%g,%g,%g", pixelinfo, x2-cmx, y2-cmy, z2-cmz); | ^~~~~~~~~~~~~ ./Tomography.c:9989:33: note: assuming directive output of 12 bytes ./Tomography.c:9989:33: note: assuming directive output of 12 bytes In function ‘sprintf’, inlined from ‘off_display’ at ./Tomography.c:9989:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 7 and 1066 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ./Tomography.c: In function ‘Monitor_nD_Init’: ./Tomography.c:10469:33: warning: ‘%li’ directive writing between 1 and 20 bytes into a region of size between 0 and 127 [-Wformat-overflow=] 10469 | sprintf(Vars->Mon_File, "%s_%li", Vars->compcurname, t); | ^~~ In function ‘sprintf’, inlined from ‘Monitor_nD_Init’ at ./Tomography.c:10469:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 3 and 149 bytes into a destination of size 128 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ DEBUG: CMD: mpicc finished INFO: ===