loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_8GPU/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Test_TasReso.c INFO: Using existing binary: ./Test_TasReso.out INFO: === Simulation 'Test_TasReso' (/home/nexmap/pkwi/TESTS/2023-04-01/McStas_8GPU_5e7/Test_TasReso/Test_TasReso.instr): running on 7 nodes (master is 'hypatia.fysik.dtu.dk', MPI version 3.1). Have found 8 GPU devices on rank 6. Will use device 6. Have found 8 GPU devices on rank 5. Will use device 5. Have found 8 GPU devices on rank 2. Will use device 2. Have found 8 GPU devices on rank 3. Will use device 3. Have found 8 GPU devices on rank 1. Will use device 1. Have found 8 GPU devices on rank 4. Will use device 4. Have found 8 GPU devices on rank 0. Will use device 0. -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [Test_TasReso] Initialize [Test_TasReso] Initialize [Test_TasReso] Initialize [Test_TasReso] Initialize [Test_TasReso] Initialize [Test_TasReso] Initialize -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [Test_TasReso] Initialize Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/HOPG.rfl' (Table_Read_Offset) Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/HOPG.trm' (Table_Read_Offset) Mode: lengths and angles Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Direct space lattice orientation: a = [0 5 3.06162e-16] b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Mode: lengths and angles Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Mode: lengths and angles Incoherent: sample_Vana: Vc=13.827 [Angs] sigma_abs=5.08 [barn] sigma_inc=5.08 [barn] Direct space lattice orientation: a = [0 5 3.06162e-16] b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/TasResoTest_xtal.laz' (Table_Read_Offset) Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Mode: lengths and angles Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Direct space lattice orientation: a = [0 5 3.06162e-16] b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Mode: lengths and angles Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Direct space lattice orientation: a = [0 5 3.06162e-16] b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Direct space lattice orientation: a = [0 5 3.06162e-16] b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Mode: lengths and angles Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Direct space lattice orientation: a = [0 5 3.06162e-16] Mode: lengths and angles Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Direct space lattice orientation: a = [0 5 3.06162e-16] b = [0 0 5] c = [5 3.06162e-16 3.06162e-16] Reciprocal space lattice orientation: a* = [-7.69468e-17 1.25664 0] b* = [-7.69468e-17 -7.69468e-17 1.25664] c* = [1.25664 0 0] Reusing input file 'HOPG.rfl' (Table_Read_Offset) Reusing input file 'HOPG.trm' (Table_Read_Offset) *** TRACE end *** Save [Test_TasReso] Detector: psdmon_I=994.677 psdmon_ERR=57.4757 psdmon_N=573 "psd.dat" Detector: divmon_I=961.454 divmon_ERR=56.3555 divmon_N=554 "div.dat" Detector: lmon_I=994.677 lmon_ERR=57.4757 lmon_N=573 "lam.dat" : 4.04694 meV , E-width : 0.0666049 meV : 4.03494 meV , E-width : 0.0704691 meV : 4.04742 meV , E-width : 0.0509212 meV : 4.04224 meV , E-width : 0.049879 meV : 4.02748 meV , E-width : 0.0545546 meV Detector: emon_I=994.677 emon_ERR=57.4757 emon_N=573 "E.dat" : 4.04693 meV , E-width : 0.0566852 meV : 4.03548 meV , E-width : 0.0575418 meV Events: "reso.dat" [hypatia:25814] *** Process received signal *** [hypatia:25814] Signal: Segmentation fault (11) [hypatia:25814] Signal code: Invalid permissions (2) [hypatia:25814] Failing at address: 0x2073ff9c8 [hypatia:25816] *** Process received signal *** [hypatia:25816] Signal: Segmentation fault (11) [hypatia:25816] Signal code: Invalid permissions (2) [hypatia:25816] Failing at address: 0x2073ff9c8 [hypatia:25818] *** Process received signal *** [hypatia:25818] Signal: Segmentation fault (11) [hypatia:25818] Signal code: Invalid permissions (2) [hypatia:25818] Failing at address: 0x2073ff9c8 [hypatia:25820] *** Process received signal *** [hypatia:25820] Signal: Segmentation fault (11) [hypatia:25820] Signal code: Invalid permissions (2) [hypatia:25820] Failing at address: 0x2073ff9c8 [hypatia:25822] *** Process received signal *** [hypatia:25822] Signal: Segmentation fault (11) [hypatia:25822] Signal code: Invalid permissions (2) [hypatia:25822] Failing at address: 0x2073ff9c8 [hypatia:25823] *** Process received signal *** [hypatia:25823] Signal: Segmentation fault (11) [hypatia:25823] Signal code: Invalid permissions (2) [hypatia:25823] Failing at address: 0x2073ff9c8 [hypatia:25814] [ 0] [hypatia:25820] [ 0] [hypatia:25822] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f711b6bb630] [hypatia:25823] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f179b030630] [hypatia:25823] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25823] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25823] [ 3] [hypatia:25816] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fa732b21630] [hypatia:25816] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25816] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25816] [ 3] ./Test_TasReso.out[0x46f996] [hypatia:25816] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25816] [hypatia:25818] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f242ab70630] [hypatia:25818] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25818] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25818] [ 3] ./Test_TasReso.out[0x46f996] [hypatia:25818] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25818] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f4778228630] [hypatia:25814] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25814] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25814] [ 3] ./Test_TasReso.out[0x46f996] [hypatia:25814] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25814] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f70eb1f4630] [hypatia:25820] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25820] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25820] [ 3] ./Test_TasReso.out[0x46f996] [hypatia:25820] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25820] [ 5] [hypatia:25822] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25822] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25822] [ 3] ./Test_TasReso.out[0x46f996] [hypatia:25822] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25822] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f70ea7bc555] [hypatia:25820] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25820] *** End of error message *** ./Test_TasReso.out[0x46f996] [hypatia:25823] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25823] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f179a5f8555] [hypatia:25823] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25823] *** End of error message *** [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fa7320e9555] [hypatia:25816] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25816] *** End of error message *** /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f242a138555] [hypatia:25818] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25818] *** End of error message *** /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f47777f0555] [hypatia:25814] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25814] *** End of error message *** /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f711ac83555] [hypatia:25822] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25822] *** End of error message *** [hypatia:25824] *** Process received signal *** [hypatia:25824] Signal: Segmentation fault (11) [hypatia:25824] Signal code: Invalid permissions (2) [hypatia:25824] Failing at address: 0x2073ff9c8 [hypatia:25824] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f441c421630] [hypatia:25824] [ 1] ./Test_TasReso.out[0x4342f0] [hypatia:25824] [ 2] ./Test_TasReso.out[0x435cab] [hypatia:25824] [ 3] ./Test_TasReso.out[0x46f996] [hypatia:25824] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:25824] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f441b9e9555] [hypatia:25824] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:25824] *** End of error message *** /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 25820 Segmentation fault "$@" -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 25823 Segmentation fault "$@" -------------------------------------------------------------------------- mpirun detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[37372,1],3] Exit code: 139 --------------------------------------------------------------------------