loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_8GPU/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Test_TasReso.c INFO: Using existing binary: ./Test_TasReso.out INFO: === Simulation 'Test_TasReso' (/home/nexmap/pkwi/TESTS/2023-02-01/McStas_8GPU_5e7/Test_TasReso/Test_TasReso.instr): running on 5 nodes (master is 'hypatia.fysik.dtu.dk', MPI version 3.1). Have found 5 GPU devices on rank 2. Will use device 2. Have found 5 GPU devices on rank 0. Will use device 0. -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [Test_TasReso] Initialize -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [Test_TasReso] Initialize Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/HOPG.rfl' (Table_Read_Offset) Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/HOPG.trm' (Table_Read_Offset) Incoherent: sample_Vana: Vc=13.827 [Angs] sigma_abs=5.08 [barn] sigma_inc=5.08 [barn] Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/TasResoTest_xtal.laz' (Table_Read_Offset) Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Reusing input file 'HOPG.rfl' (Table_Read_Offset) Reusing input file 'HOPG.trm' (Table_Read_Offset) Have found 5 GPU devices on rank 4. Will use device 4. -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [Test_TasReso] Initialize Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Have found 5 GPU devices on rank 3. Will use device 3. Have found 5 GPU devices on rank 1. Will use device 1. -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [Test_TasReso] Initialize [Test_TasReso] Initialize Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz *** TRACE end *** Save [Test_TasReso] Detector: psdmon_I=917.35 psdmon_ERR=53.9381 psdmon_N=565 "psd.dat" Detector: divmon_I=883.342 divmon_ERR=52.6458 divmon_N=546 "div.dat" Detector: lmon_I=917.35 lmon_ERR=53.9381 lmon_N=565 "lam.dat" : 4.03277 meV , E-width : 0.0553205 meV : 4.04019 meV , E-width : 0.0601867 meV : 4.03051 meV , E-width : 0.0554921 meV Detector: emon_I=917.35 emon_ERR=53.9381 emon_N=565 "E.dat" : 4.0463 meV , E-width : 0.0509525 meV : 4.0354 meV , E-width : 0.0588115 meV Events: "reso.dat" [hypatia:19284] *** Process received signal *** [hypatia:19285] *** Process received signal *** [hypatia:19288] *** Process received signal *** [hypatia:19288] Signal: Segmentation fault (11) [hypatia:19288] Signal code: Invalid permissions (2) [hypatia:19288] Failing at address: 0x2073ff9c8 [hypatia:19284] Signal: Segmentation fault (11) [hypatia:19284] Signal code: Invalid permissions (2) [hypatia:19284] Failing at address: 0x2073ff9c8 [hypatia:19285] Signal: Segmentation fault (11) [hypatia:19285] Signal code: Invalid permissions (2) [hypatia:19285] Failing at address: 0x2073ff9c8 [hypatia:19287] *** Process received signal *** [hypatia:19287] Signal: Segmentation fault (11) [hypatia:19287] Signal code: Invalid permissions (2) [hypatia:19287] Failing at address: 0x2073ff9c8 [hypatia:19289] *** Process received signal *** [hypatia:19289] Signal: Segmentation fault (11) [hypatia:19289] Signal code: Invalid permissions (2) [hypatia:19289] Failing at address: 0x2073ff9c8 [hypatia:19285] [ 0] [hypatia:19284] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f2578480630] [hypatia:19289] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fdf157d6630] [hypatia:19289] [ 1] [hypatia:19287] [ 0] [hypatia:19284] [ 1] ./Test_TasReso.out[0x433ff0] [hypatia:19284] [ 2] ./Test_TasReso.out[0x4359ab] [hypatia:19284] [ 3] ./Test_TasReso.out[0x46f856] [hypatia:19284] [ 4] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fa8fb21d630] [hypatia:19285] [ 1] ./Test_TasReso.out[0x433ff0] [hypatia:19285] [ 2] ./Test_TasReso.out[0x4359ab] [hypatia:19285] [ 3] ./Test_TasReso.out[0x433ff0] [hypatia:19289] [ 2] ./Test_TasReso.out[0x4359ab] [hypatia:19289] [ 3] ./Test_TasReso.out[0x46f856] [hypatia:19289] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:19289] [ 5] ./Test_TasReso.out[0x46f856] [hypatia:19285] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:19285] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fa8fa7e5555] [hypatia:19285] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:19285] *** End of error message *** [hypatia:19288] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7effc76cf630] [hypatia:19287] [ 1] ./Test_TasReso.out[0x433ff0] [hypatia:19287] [ 2] ./Test_TasReso.out[0x4359ab] [hypatia:19287] [ 3] ./Test_TasReso.out[0x46f856] [hypatia:19287] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:19287] [ 5] ./Test_TasReso.out[0x416f40] [hypatia:19284] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f2577a48555] [hypatia:19284] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:19284] *** End of error message *** /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fdf14d9e555] [hypatia:19289] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:19289] *** End of error message *** /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7effc6c97555] [hypatia:19287] [ 6] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f7dc3062630] [hypatia:19288] [ 1] ./Test_TasReso.out[0x433ff0] [hypatia:19288] [ 2] ./Test_TasReso.out[0x4359ab] [hypatia:19288] [ 3] ./Test_TasReso.out[0x46f856] [hypatia:19288] [ 4] ./Test_TasReso.out[0x416f40] [hypatia:19288] ./Test_TasReso.out[0x4031e9] [hypatia:19287] *** End of error message *** [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f7dc262a555] [hypatia:19288] [ 6] ./Test_TasReso.out[0x4031e9] [hypatia:19288] *** End of error message *** /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 19288 Segmentation fault "$@" -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 19289 Segmentation fault (core dumped) "$@" -------------------------------------------------------------------------- mpirun detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[48767,1],3] Exit code: 139 --------------------------------------------------------------------------