loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_CPU_MPICC_KISS/mccode_config.json INFO: No output directory specified (--dir) INFO: Using directory: "Test_MCPL_input_20221201_065338" INFO: Regenerating c-file: Test_MCPL_input.c DEBUG: CMD: mcstas -t -o ./Test_MCPL_input.c /home/nexmap/pkwi/TESTS/2022-12-01/McStas_CPU_MPICC_KISS_2e7/Test_MCPL_input/Test_MCPL_input.instr CFLAGS= -DMCPLPATH=GETPATH(data/voutput.mcpl) -Wl,-rpath,CMD(mcpl-config --show libdir) -LCMD(mcpl-config --show libdir) -lmcpl -ICMD(mcpl-config --show includedir) -I@MCCODE_LIB@/miniconda3/include -Wl,-rpath,@MCCODE_LIB@/miniconda3/lib -L@MCCODE_LIB@/miniconda3/lib ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- INFO: Recompiling: ./Test_MCPL_input.out --> pointing datafile data/voutput.mcpl to /u/data/pkwi/McStas/mcstas/3.x-dev/data/voutput.mcpl --> launching cmd: mcpl-config --show libdir --> launching cmd: mcpl-config --show libdir --> launching cmd: mcpl-config --show includedir DEBUG: CMD: mpicc -o ./Test_MCPL_input.out ./Test_MCPL_input.c -lm -DUSE_MPI -lmpi -g -lm -O2 -DUSE_MPI -lmpi -std=c99 -D_POSIX_SOURCE -DMCPLPATH=/u/data/pkwi/McStas/mcstas/3.x-dev/data/voutput.mcpl -Wl,-rpath,/u/data/pkwi/McStas/mcstas/3.x-dev/lib -L/u/data/pkwi/McStas/mcstas/3.x-dev/lib -lmcpl -I/u/data/pkwi/McStas/mcstas/3.x-dev/include -I/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/include -Wl,-rpath,/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib -L/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: warning: libz.so.1, needed by /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so, not found (try using -rpath or -rpath-link) /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `inflateEnd' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzopen' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzclose' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflate' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflateBound@ZLIB_1.2.0' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflateInit_' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzseek' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `inflate' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `memcpy@GLIBC_2.14' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzwrite' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflateEnd' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gztell' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../miniconda3/lib/./libopen-rte.so.40: undefined reference to `inflateInit_' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzread' collect2: error: ld returned 1 exit status