loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_CPU_MPICC_KISS/mccode_config.json INFO: No output directory specified (--dir) INFO: Using directory: "McStas_Isotropic_Sqw_20221201_001451" INFO: Regenerating c-file: McStas_Isotropic_Sqw.c DEBUG: CMD: mcstas -t -o ./McStas_Isotropic_Sqw.c /home/nexmap/pkwi/TESTS/2022-12-01/McStas_CPU_MPICC_KISS_1e7/McStas_Isotropic_Sqw/McStas_Isotropic_Sqw.instr CFLAGS= -Wl,-rpath,CMD(mcpl-config --show libdir) -LCMD(mcpl-config --show libdir) -lmcpl -ICMD(mcpl-config --show includedir) -Wl,-rpath,CMD(mcpl-config --show libdir) -LCMD(mcpl-config --show libdir) -lmcpl -ICMD(mcpl-config --show includedir) WARNING: The parameter powder_format of Iso is initialized using a static {,,,} vector. -> Such static vectors support literal numbers ONLY. -> Any vector use of variables or defines must happen via a DECLARE/INITIALIZE pointer. ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- INFO: Recompiling: ./McStas_Isotropic_Sqw.out --> launching cmd: mcpl-config --show libdir --> launching cmd: mcpl-config --show libdir --> launching cmd: mcpl-config --show includedir --> launching cmd: mcpl-config --show libdir --> launching cmd: mcpl-config --show libdir --> launching cmd: mcpl-config --show includedir DEBUG: CMD: mpicc -o ./McStas_Isotropic_Sqw.out ./McStas_Isotropic_Sqw.c -lm -DUSE_MPI -lmpi -g -lm -O2 -DUSE_MPI -lmpi -std=c99 -D_POSIX_SOURCE -Wl,-rpath,/u/data/pkwi/McStas/mcstas/3.x-dev/lib -L/u/data/pkwi/McStas/mcstas/3.x-dev/lib -lmcpl -I/u/data/pkwi/McStas/mcstas/3.x-dev/include -Wl,-rpath,/u/data/pkwi/McStas/mcstas/3.x-dev/lib -L/u/data/pkwi/McStas/mcstas/3.x-dev/lib -lmcpl -I/u/data/pkwi/McStas/mcstas/3.x-dev/include /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: warning: libz.so.1, needed by /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so, not found (try using -rpath or -rpath-link) /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `inflateEnd' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzopen' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzclose' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflate' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflateBound@ZLIB_1.2.0' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflateInit_' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzseek' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `inflate' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `memcpy@GLIBC_2.14' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzwrite' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `deflateEnd' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gztell' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /home/nexmap/pkwi/WORK/miniconda3/lib/./libopen-rte.so.40: undefined reference to `inflateInit_' /u/data/pkwi/WORK/miniconda3/bin/../lib/gcc/x86_64-conda-linux-gnu/12.2.0/../../../../x86_64-conda-linux-gnu/bin/ld: /u/data/pkwi/McStas/mcstas/3.x-dev/lib/libmcpl.so: undefined reference to `gzread' collect2: error: ld returned 1 exit status