loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_8GPU/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Union_conditional_test.c INFO: Using existing binary: ./Union_conditional_test.out INFO: === Simulation 'Union_conditional_test' (/home/nexmap/pkwi/TESTS/2022-11-01/McStas_8GPU_5e7/Union_conditional_test/Union_conditional_test.instr): running on 7 nodes (master is 'hypatia.fysik.dtu.dk', MPI version 3.1). Have found 8 GPU devices on rank 5. Will use device 5. Have found 8 GPU devices on rank 4. Will use device 4. Have found 8 GPU devices on rank 0. Will use device 0. Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/Cu.laz' (Table_Read_Offset) PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize starded conditional initialize --------------------------------------------------------------------- global_process_list_master->num_elements: 5 name of process [0]: Vanadium_incoherent component index [0]: 2 name of process [1]: Al_incoherent component index [1]: 4 name of process [2]: Al_Powder component index [2]: 5 name of process [3]: Cu_incoherent component index [3]: 7 name of process [4]: Cu_Powder component index [4]: 8 --------------------------------------------------------------------- global_material_list_master->num_elements: 3 name of material [0]: Vanadium component index [0]: 3 my_absoprtion [0]: 36.731743 number of processes [0]: 1 name of material [1]: Al component index [1]: 6 my_absoprtion [1]: 1.391566 number of processes [1]: 2 name of material [2]: Cu component index [2]: 9 my_absoprtion [2]: 160.101652 number of processes [2]: 2 --------------------------------------------------------------------- global_geometry_list_master->num_elements: 3 name of geometry [0]: cryostat_wall component index [0]: 13 Volume.name [0]: cryostat_wall Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absorption [0]: 1.391566 Volume.p_physics.number of processes [0]: 2 Volume.geometry.shape [0]: cylinder Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 0.300000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.geometry_parameters.cyl_radius [0]: 0.070000 Volume.geometry.geometry_parameters.height [0]: 0.320000 Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] name of geometry [1]: cryostat_wall_vacuum component index [1]: 14 Volume.name [1]: cryostat_wall_vacuum Volume.p_physics.is_vacuum [1]: 1 Volume.p_physics.my_absorption [1]: 0.000000 Volume.p_physics.number of processes [1]: 0 Volume.geometry.shape [1]: cylinder Volume.geometry.center.x [1]: 0.000000 Volume.geometry.center.y [1]: 0.000000 Volume.geometry.center.z [1]: 0.300000 Volume.geometry.rotation_matrix[0] [1]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [1]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [1]: [0.000000 0.000000 1.000000] Volume.geometry.geometry_parameters.cyl_radius [1]: 0.068000 Volume.geometry.geometry_parameters.height [1]: 0.318000 Volume.geometry.focus_data_array.elements[0].Aim [1]: [0.000000 0.000000 1.000000] name of geometry [2]: sample_sphere component index [2]: 15 Volume.name [2]: sample_sphere Volume.p_physics.is_vacuum [2]: 0 Volume.p_physics.my_absorption [2]: 160.101652 Volume.p_physics.number of processes [2]: 2 Volume.geometry.shape [2]: sphere Volume.geometry.center.x [2]: 0.010000 Volume.geometry.center.y [2]: 0.000000 Volume.geometry.center.z [2]: 0.300000 Volume.geometry.rotation_matrix[0] [2]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [2]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [2]: [0.000000 0.000000 1.000000] Volume.geometry.focus_data_array.elements[0].Aim [2]: [0.000000 0.000000 1.000000] name of geometry [3]: sample_box component index [3]: 16 Volume.name [3]: sample_box Volume.p_physics.is_vacuum [3]: 0 Volume.p_physics.my_absorption [3]: 36.731743 Volume.p_physics.number of processes [3]: 1 Volume.geometry.shape [3]: box Volume.geometry.center.x [3]: -0.010000 Volume.geometry.center.y [3]: 0.000000 Volume.geometry.center.z [3]: 0.300000 Volume.geometry.rotation_matrix[0] [3]: [0.956305 0.163492 -0.242387] Volume.geometry.rotation_matrix[1] [3]: [-0.000000 0.829038 0.559193] Volume.geometry.rotation_matrix[2] [3]: [0.292372 -0.534759 0.792813] Volume.geometry.focus_data_array.elements[0].Aim [3]: [0.000000 0.000000 1.000000] name of geometry [4]: sample_cone component index [4]: 17 Volume.name [4]: sample_cone Volume.p_physics.is_vacuum [4]: 0 Volume.p_physics.my_absorption [4]: 160.101652 Volume.p_physics.number of processes [4]: 2 Volume.geometry.shape [4]: cone Volume.geometry.center.x [4]: 0.020000 Volume.geometstarded conditional initialize ry.center.y [4]: -0.030000 Volume.geometry.center.z [4]: 0.300000 Volume.geometry.rotation_matrix[0] [4]: [0.939693 0.342020 0.000000] Volume.geometry.rotation_matrix[1] [4]: [-0.342020 0.939693 0.000000] Volume.geometry.rotation_matrix[2] [4]: [0.000000 -0.000000 1.000000] Volume.geometry.focus_data_array.elements[0].Aim [4]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 6 number_of_masks = 0 number_of_masked_volumes = 0 ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1,2,3,4,5] LIST: Direct_children for Volume 0 = [1] LIST: Intersect_check_list for Volume 0 = [1] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for cryostat_wall with cylinder shape made of Al LIST: Children for Volume 1 = [2,3,4,5] LIST: Direct_children for Volume 1 = [2] LIST: Intersect_check_list for Volume 1 = [2] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0,2] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 List overview for cryostat_wall_vacuum with cylinder shape made of Vacuum LIST: Children for Volume 2 = [3,4,5] LIST: Direct_children for Volume 2 = [3,4,5] LIST: Intersect_check_list for Volume 2 = [3,4,5] LIST: Mask_intersect_list for Volume 2 = [] LIST: Destinations_list for Volume 2 = [1] LIST: Reduced_destinations_list for Volume 2 = [1] LIST: Next_volume_list for Volume 2 = [1,3,4,5] Is_vacuum for Volume 2 = 1 is_mask_volume for Volume 2 = 0 is_masked_volume for Volume 2 = 0 is_exit_volume for Volume 2 = 0 LIST: mask_list for Volume 2 = [] LIST: masked_by_list for Volume 2 = [] LIST: masked_by_mask_index_list for Volume 2 = [] mask_mode for Volume 2 = 0 List overview for sample_sphere with sphere shape made of Cu LIST: Children for Volume 3 = [] LIST: Direct_children for Volume 3 = [] LIST: Intersect_check_list for Volume 3 = [4,5] LIST: Mask_intersect_list for Volume 3 = [] LIST: Destinations_list for Volume 3 = [2] LIST: Reduced_destinations_list for Volume 3 = [2] LIST: Next_volume_list for Volume 3 = [2,4,5] Is_vacuum for Volume 3 = 0 is_mask_volume for Volume 3 = 0 is_masked_volume for Volume 3 = 0 is_exit_volume for Volume 3 = 0 LIST: mask_list for Volume 3 = [] LIST: masked_by_list for Volume 3 = [] LIST: masked_by_mask_index_list for Volume 3 = [] mask_mode for Volume 3 = 0 List overview for sample_box with box shape made of Vanadium LIST: Children for Volume 4 = [] LIST: Direct_children for Volume 4 = [] LIST: Intersect_check_list for Volume 4 = [5] LIST: Mask_intersect_list for Volume 4 = [] LIST: Destinations_list for Volume 4 = [2,3] LIST: Reduced_destinations_list for Volume 4 = [2] LIST: Next_volume_list for Volume 4 = [2,3,5] Is_vacuum for Volume 4 = 0 is_mask_volume for Volume 4 = 0 is_masked_volume for Volume 4 = 0 is_exit_volume for Volume 4 = 0 LIST: mask_list for Volume 4 = [] LIST: masked_by_list for Volume 4 = [] LIST: masked_by_mask_index_list for Volume 4 = [] mask_mode for Volume 4 = 0 List overview for sample_cone with cone shape made of Cu LIST: Children for Volume 5 = [] LIST: Direct_children for Volume 5 = [] LIST: Intersect_check_list for Volume 5 = [] LIST: Mask_intersect_list for Volume 5 = [] LIST: Destinations_list for Volume 5 = [2,3,4] LIST: Reduced_destinations_list for Volume 5 = [2] LIST: Next_volume_list for Volume 5 = [2,3,4] Is_vacuum for Volume 5 = 0 is_mask_volume for Volume 5 = 0 is_masked_volume for Volume 5 = 0 is_exit_volume for Volume 5 = 0 LIST: mask_list for Volume 5 = [] LIST: masked_by_list for Volume 5 = [] LIST: masked_by_mask_index_list for Volume 5 = [] mask_mode for Volume 5 = 0 Union_master component sample initialized sucessfully Have found 8 GPU devices on rank 3. Will use device 3. Have found 8 GPU devices on rank 2. Will use device 2. Have found 8 GPU devices on rank 1. Will use device 1. Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize starded conditional initialize starded conditional initialize starded conditional initialize starded conditional initialize Have found 8 GPU devices on rank 6. Will use device 6. Table from file 'Al.laz' (block 1) is 26 x 18 (x=1:8), constant step. interpolation: linear '# TITLE *Aluminum-Al-[FM3-M] Miller, H.P.jr.;DuMond, J.W.M.[1942] at 298 K; ...' PowderN: Al_Powder: Reading 26 rows from Al.laz PowderN: Al_Powder: Read 26 reflections from file 'Al.laz' PowderN: Al_Powder: Vc=66.4 [Angs] sigma_abs=0.924 [barn] sigma_inc=0.0328 [barn] reflections=Al.laz Table from file 'Cu.laz' (block 1) is 19 x 18 (x=1:6), constant step. interpolation: linear '# TITLE *-Cu-[FM3-M] Otte, H.M.[1961];# CELL 3.615050 3.615050 3.615050 90. ...' PowderN: Cu_Powder: Reading 19 rows from Cu.laz PowderN: Cu_Powder: Read 19 reflections from file 'Cu.laz' PowderN: Cu_Powder: Vc=47.24 [Angs] sigma_abs=15.12 [barn] sigma_inc=2.2 [barn] reflections=Cu.laz [Union_conditional_test] Initialize starded conditional initialize NOTE: CPU COMPONENT grammar activated: 1) "FUNNEL" raytrace algorithm enabled. 2) Any SPLIT's are dynamically allocated based on available buffer size. Save [Union_conditional_test] Detector: test_logger_1D_I=379295 test_logger_1D_ERR=73.3057 test_logger_1D_N=2.16439e+08 "logger_1D.dat" Detector: test_logger_2D_space_zx_I=379296 test_logger_2D_space_zx_ERR=73.3057 test_logger_2D_space_zx_N=2.3058e+08 "logger_2D_space_zx.dat" Detector: test_logger_2D_space_zy_I=378812 test_logger_2D_space_zy_ERR=73.2936 test_logger_2D_space_zy_N=2.29754e+08 "logger_2D_space_zy.dat" Detector: test_logger_2D_space_zx_con_time_I=76700.2 test_logger_2D_space_zx_con_time_ERR=34.3704 test_logger_2D_space_zx_con_time_N=4.19534e+07 "logger_2D_space_zx_con_time.dat" Detector: test_logger_2D_space_zx_con_PSD_I=386.302 test_logger_2D_space_zx_con_PSD_ERR=2.29425 test_logger_2D_space_zx_con_PSD_N=555008 "logger_2D_space_zx_con_PSD.dat" Detector: detector_I=2.49643e+06 detector_ERR=550.704 detector_N=2.09138e+07 "PSD.dat" Finally [Union_conditional_test: 1]. Time: 23 [s] Finally [Union_conditional_test: 1]. Time: 23 [s] Finally [Union_conditional_test: 1]. Time: 23 [s] Finally [Union_conditional_test: 1]. Time: 23 [s] Finally [Union_conditional_test: 1]. Time: 23 [s] Detector: detector_scat_I=39.8347 detector_scat_ERR=0.691273 detector_scat_N=24091 "PSD_scat.dat" Finally [Union_conditional_test: 1]. Time: 23 [s] Finally [Union_conditional_test: 1]. Time: 23 [s] INFO: Placing instr file copy /home/nexmap/pkwi/TESTS/2022-11-01/McStas_8GPU_5e7/Union_conditional_test/Union_conditional_test.instr in dataset 1