loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_8GPU/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Test_TasReso.c INFO: Using existing binary: ./Test_TasReso.out INFO: === Simulation 'TasResoTest' (/home/nexmap/pkwi/TESTS/2022-11-01/McStas_8GPU_5e7/Test_TasReso/Test_TasReso.instr): running on 7 nodes (master is 'hypatia.fysik.dtu.dk', MPI version 3.1). Have found 8 GPU devices on rank 6. Will use device 6. Have found 8 GPU devices on rank 0. Will use device 0. Have found 8 GPU devices on rank 4. Will use device 4. -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Have found 8 GPU devices on rank 3. Will use device 3. -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [TasResoTest] Initialize [TasResoTest] Initialize Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/HOPG.rfl' (Table_Read_Offset) Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/HOPG.trm' (Table_Read_Offset) Incoherent: sample_Vana: Vc=13.827 [Angs] sigma_abs=5.08 [barn] sigma_inc=5.08 [barn] Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/TasResoTest_xtal.laz' (Table_Read_Offset) Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Reusing input file 'HOPG.rfl' (Table_Read_Offset) Reusing input file 'HOPG.trm' (Table_Read_Offset) Have found 8 GPU devices on rank 2. Will use device 2. -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [TasResoTest] Initialize [TasResoTest] Initialize Have found 8 GPU devices on rank 5. Will use device 5. Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Have found 8 GPU devices on rank 1. Will use device 1. -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Source: lambda = 4.5000 A, k = 1.3963 1/A, E = 4.0397 meV Monochromator: ki = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Analyser: kf = 1.3963, theta = 42.1165 deg, d = 3.3550, vfoc = 0.6706 m, hfoc = 1.4911 m Sample: num = 2, theta = 26.7400, 2theta = 53.4800 -------------------------------------------------------------------------------- [TasResoTest] Initialize [TasResoTest] Initialize [TasResoTest] Initialize Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz Single_crystal: TasResoTest_xtal.laz structure a=5 b=5 c=5 aa=90 bb=90 cc=90 V0=125 Single_crystal: sample_xtal: Read 6 reflections from file 'TasResoTest_xtal.laz' Single_crystal: sample_xtal: Vc=125 [Angs] sigma_abs=0 [barn] sigma_inc=0 [barn] reflections=TasResoTest_xtal.laz *** TRACE end *** Save [TasResoTest] Detector: psdmon_I=994.677 psdmon_ERR=57.4757 psdmon_N=573 "psd.dat" Detector: divmon_I=961.454 divmon_ERR=56.3555 divmon_N=554 "div.dat" Detector: lmon_I=994.677 lmon_ERR=57.4757 lmon_N=573 "lam.dat" : 4.0415 meV , E-width : 0.0498454 meV : 4.02748 meV , E-width : 0.0545461 meV : 4.04827 meV , E-width : 0.0505769 meV Detector: emon_I=994.677 emon_ERR=57.4757 emon_N=573 "E.dat" : 4.04694 meV , E-width : 0.0666049 meV : 4.03548 meV , E-width : 0.0575418 meV : 4.04691 meV , E-width : 0.0566829 meV Events: "reso.dat" : 4.03489 meV , E-width : 0.0696384 meV [hypatia:17052] *** Process received signal *** [hypatia:17052] Signal: Segmentation fault (11) [hypatia:17052] Signal code: Invalid permissions (2) [hypatia:17052] Failing at address: 0x7ff4177ff9c8 [hypatia:17055] *** Process received signal *** [hypatia:17055] Signal: Segmentation fault (11) [hypatia:17055] Signal code: Invalid permissions (2) [hypatia:17055] Failing at address: 0x7fcdbb7ff9c8 [hypatia:17057] *** Process received signal *** [hypatia:17057] Signal: Segmentation fault (11) [hypatia:17057] Signal code: Invalid permissions (2) [hypatia:17057] Failing at address: 0x7fac997ff9c8 [hypatia:17059] *** Process received signal *** [hypatia:17059] Signal: Segmentation fault (11) [hypatia:17059] Signal code: Invalid permissions (2) [hypatia:17059] Failing at address: 0x7fab297ff9c8 [hypatia:17061] *** Process received signal *** [hypatia:17061] Signal: Segmentation fault (11) [hypatia:17061] Signal code: Invalid permissions (2) [hypatia:17061] Failing at address: 0x7ff5f57ff9c8 [hypatia:17062] *** Process received signal *** [hypatia:17062] Signal: Segmentation fault (11) [hypatia:17062] Signal code: Invalid permissions (2) [hypatia:17062] Failing at address: 0x7f66a77ff9c8 [hypatia:17052] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7ff48e992630] [hypatia:17052] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17052] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17052] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17052] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17052] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7ff48df6d555] [hypatia:17052] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17052] *** End of error message *** [hypatia:17055] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fce2f2ca630] [hypatia:17055] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17055] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17055] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17055] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17055] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fce2e8a5555] [hypatia:17055] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17055] *** End of error message *** [hypatia:17057] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fad0f668630] [hypatia:17057] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17057] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17057] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17057] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17057] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fad0ec43555] [hypatia:17057] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17057] *** End of error message *** [hypatia:17059] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fab9f7c3630] [hypatia:17059] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17059] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17059] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17059] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17059] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fab9ed9e555] [hypatia:17059] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17059] *** End of error message *** [hypatia:17061] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7ff66a540630] [hypatia:17061] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17061] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17061] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17061] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17061] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7ff669b1b555] [hypatia:17061] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17061] *** End of error message *** [hypatia:17062] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7f671eb2e630] [hypatia:17062] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17062] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17062] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17062] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17062] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7f671e109555] [hypatia:17062] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17062] *** End of error message *** [hypatia:17063] *** Process received signal *** [hypatia:17063] Signal: Segmentation fault (11) [hypatia:17063] Signal code: Invalid permissions (2) [hypatia:17063] Failing at address: 0x7fd71d7ff9c8 [hypatia:17063] [ 0] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.so.0(+0xf630)[0x7fd7955bd630] [hypatia:17063] [ 1] ./Test_TasReso.out[0x431193] [hypatia:17063] [ 2] ./Test_TasReso.out[0x4339eb] [hypatia:17063] [ 3] ./Test_TasReso.out[0x469e53] [hypatia:17063] [ 4] ./Test_TasReso.out[0x416780] [hypatia:17063] [ 5] /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libc.so.6(__libc_start_main+0xf5)[0x7fd794b98555] [hypatia:17063] [ 6] ./Test_TasReso.out[0x403169] [hypatia:17063] *** End of error message *** /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 17059 Segmentation fault "$@" -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 17057 Segmentation fault "$@" -------------------------------------------------------------------------- mpirun detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[47010,1],3] Exit code: 139 --------------------------------------------------------------------------