loading system configuration loading override configuration from /zhome/89/0/38697/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_GPU_PGCC_TESLA_KISS/mccode_config.json INFO: No output directory specified (--dir) INFO: Using directory: "Union_test_absorption_20220901_024530" INFO: Regenerating c-file: Union_test_absorption.c DEBUG: CMD: mcstas -t -o ./Union_test_absorption.c /zhome/89/0/38697/TESTS/2022-09-01/McStas_GPU_PGCC_TESLA_KISS_5e7/Union_test_absorption/Union_test_absorption.instr Warning: DECLARE block contains 2 assignments (= sign). Move them into an INITIALIZE section. May fail at compile. CFLAGS= -I@MCCODE_LIB@/share/ -DFUNNEL ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component test_sample is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component test_sample -> GPU kernel from component screen ----------------------------------------------------------- INFO: Recompiling: ./Union_test_absorption.out DEBUG: CMD: nvc -o ./Union_test_absorption.out ./Union_test_absorption.c -lm -fast -Minfo=accel -acc=gpu -gpu=managed -DOPENACC -I/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/ -DFUNNEL "./Union_test_absorption.c", line 4132: warning: variable "randstate" was declared but never referenced unsigned long randstate[7]; ^ "./Union_test_absorption.c", line 4051: warning: variable "newlen" was declared but never referenced long newlen = 0; ^ "./Union_test_absorption.c", line 7303: warning: variable "output" was declared but never referenced struct tagging_tree_node_struct *output; ^ "./Union_test_absorption.c", line 7583: warning: argument of type "int (*)(const struct saved_history_struct *, const struct saved_history_struct *)" is incompatible with parameter of type "__compar_fn_t" qsort(total_history.saved_histories,total_history.used_elements,sizeof (struct saved_history_struct), Sample_compare_history_intensities); ^ "./Union_test_absorption.c", line 7587: warning: argument of type "struct saved_history_struct *" is incompatible with parameter of type "struct dynamic_history_list *" MPI_MASTER( ^ "./Union_test_absorption.c", line 7814: warning: variable "permanent_list_length" was declared but never referenced int volume_index,iterate,permanent_list_length = 0; ^ "./Union_test_absorption.c", line 7837: warning: variable "geometry_output" was set but never used int geometry_output; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 315: warning: variable "x_vector" was declared but never referenced Coords x_vector = geometry->geometry_parameters.p_box_storage->x_vector; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 316: warning: variable "y_vector" was declared but never referenced Coords y_vector = geometry->geometry_parameters.p_box_storage->y_vector; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 317: warning: variable "z_vector" was declared but never referenced Coords z_vector = geometry->geometry_parameters.p_box_storage->z_vector; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 477: warning: variable "center" was declared but never referenced Coords center = geometry->center; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 839: warning: missing return statement at end of non-void function "sample_cone_intersect" }; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 697: warning: variable "output" was set but never used int output; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 883: warning: missing return statement at end of non-void function "cone_intersect" }; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 854: warning: variable "radius_top" was declared but never referenced double radius_top = geometry->geometry_parameters.p_cone_storage->cone_radius_top; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 855: warning: variable "radius_bottom" was declared but never referenced double radius_bottom = geometry->geometry_parameters.p_cone_storage->cone_radius_bottom; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1129: warning: statement is unreachable return 0; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 888: warning: variable "center" was declared but never referenced Coords center = geometry->center; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 890: warning: variable "normal_x" was declared but never referenced double *normal_x = geometry->geometry_parameters.p_mesh_storage->normal_x; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 891: warning: variable "normal_y" was declared but never referenced double *normal_y = geometry->geometry_parameters.p_mesh_storage->normal_y; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 892: warning: variable "normal_z" was declared but never referenced double *normal_z = geometry->geometry_parameters.p_mesh_storage->normal_z; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 916: warning: variable "verbal" was declared but never referenced int verbal = 0; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 925: warning: variable "tmp" was declared but never referenced Coords edge1,edge2,h,s,q,tmp,intersect_pos; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 925: warning: variable "intersect_pos" was declared but never referenced Coords edge1,edge2,h,s,q,tmp,intersect_pos; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 927: warning: variable "this_facet_t" was declared but never referenced double this_facet_t; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 976: warning: variable "C1" was declared but never referenced int C1 = counter; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1143: warning: variable "normal_x" was declared but never referenced double *normal_x = geometry->geometry_parameters.p_mesh_storage->normal_x; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1144: warning: variable "normal_y" was declared but never referenced double *normal_y = geometry->geometry_parameters.p_mesh_storage->normal_y; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1145: warning: variable "normal_z" was declared but never referenced double *normal_z = geometry->geometry_parameters.p_mesh_storage->normal_z; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1174: warning: variable "center" was declared but never referenced Coords center = geometry->center; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1232: warning: variable "output" was set but never used int output; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1248: warning: variable "tmp" was declared but never referenced Coords edge1,edge2,h,s,q,tmp,intersect_pos; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1248: warning: variable "intersect_pos" was declared but never referenced Coords edge1,edge2,h,s,q,tmp,intersect_pos; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1249: warning: variable "UNION_EPSILON" was declared but never referenced double UNION_EPSILON = 0.0000001; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1250: warning: variable "this_facet_t" was declared but never referenced double this_facet_t; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1685: warning: variable "vector2" is used before its value is set if (verbal == 1) printf("vector1 = (%f,%f,%f)\n",vector1.x,vector1.y,vector2.z); ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1674: warning: variable "seperated" was declared but never referenced int seperated = 0; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1751: warning: variable "seperated" was declared but never referenced int seperated = 0; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 1958: warning: variable "seperated" was declared but never referenced int seperated = 0; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 2056: warning: variable "solutions" was declared but never referenced int iterate,number_of_solutions,solutions,number_of_positions = 30; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 2242: warning: variable "seperated" was declared but never referenced int seperated = 0; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 2435: warning: variable "Y" was declared but never referenced double Y; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 2436: warning: variable "max_r" was declared but never referenced double max_r; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 2970: warning: variable "Y" was declared but never referenced double Y; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 2971: warning: variable "max_r" was declared but never referenced double max_r; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3370: warning: variable "square_center" is used before its value is set Coords box_end_point = coords_sub(coords_set(0,0,-z_depth/2),square_center); ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3230: warning: variable "is_rectangle" was declared but never referenced int is_rectangle = geometry_box->geometry_parameters.p_box_storage->is_rectangle; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3235: warning: variable "y_height2" was declared but never referenced double y_height2 = geometry_box->geometry_parameters.p_box_storage->y_height2; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3236: warning: variable "x_vector" was declared but never referenced Coords x_vector = geometry_box->geometry_parameters.p_box_storage->x_vector; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3237: warning: variable "y_vector" was declared but never referenced Coords y_vector = geometry_box->geometry_parameters.p_box_storage->y_vector; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3244: warning: variable "Y" was declared but never referenced double Y; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3245: warning: variable "max_r" was declared but never referenced double max_r; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3368: warning: variable "square_offset" was declared but never referenced double square_offset; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3634: warning: variable "debug_dist" was set but never used double debug_dist; ^ "/zhome/89/0/38697/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../share/Geometry_functions.c", line 3700: warning: variable "seperated" was declared but never referenced int seperated = 0; ^ "./Union_test_absorption.c", line 8054: warning: variable "temp_pointer" was declared but never referenced int *temp_pointer; ^ "./Union_test_absorption.c", line 8057: warning: variable "mask_global_index" was declared but never referenced int this_mask_status,mask_index,mask_global_index; ^ "./Union_test_absorption.c", line 8214: warning: variable "temp_pointer" was declared but never referenced int *temp_pointer; ^ "./Union_test_absorption.c", line 8217: warning: variable "mask_global_index" was declared but never referenced int this_mask_status,mask_index,mask_global_index; ^ "./Union_test_absorption.c", line 9136: warning: variable "found_index" was declared but never referenced int mask_index,mask_mode,found_index,logic_ALL; ^ "./Union_test_absorption.c", line 9045: warning: variable "mask_index" was declared but never referenced int volume_index,mask_volume_number,mask_index; ^ "./Union_test_absorption.c", line 9348: warning: variable "mask_index" was declared but never referenced int volume_index,iterate,parent,mask_index,masked_volume_index,ANY_logic,true_parent_volume_number; ^ "./Union_test_absorption.c", line 9538: warning: variable "found_index" was declared but never referenced int volume_index,iterate,iterate2,found_index,I_index,I_volume; ^ "./Union_test_absorption.c", line 9687: warning: variable "string_output" was declared but never referenced char string_output[124]; ^ "./Union_test_absorption.c", line 10091: warning: variable "mask_index" was declared but never referenced int volume_index,iterate,mask_index; ^ "./Union_test_absorption.c", line 29891: warning: variable "tc2" was declared but never referenced Coords tc1, tc2; ^ "./Union_test_absorption.c", line 29892: warning: variable "tr1" was declared but never referenced Rotation tr1; ^ "./Union_test_absorption.c", line 29932: warning: variable "tc2" was declared but never referenced Coords tc1, tc2; ^ "./Union_test_absorption.c", line 29971: warning: variable "tc2" was declared but never referenced Coords tc1, tc2; ^ "./Union_test_absorption.c", line 30241: warning: variable "tc2" was declared but never referenced Coords tc1, tc2; ^ "./Union_test_absorption.c", line 31477: warning: expression has no effect MPI_MASTER( ^ "./Union_test_absorption.c", line 31477: warning: expression has no effect MPI_MASTER( ^ "./Union_test_absorption.c", line 31477: warning: expression has no effect MPI_MASTER( ^ "./Union_test_absorption.c", line 32632: warning: variable "physics_output" was set but never used int physics_output; ^ "./Union_test_absorption.c", line 35624: warning: variable "t" is used before its value is set mcstartdate = (long)t; /* set start date before parsing options and creating sim file */ ^ "./Union_test_absorption.c", line 35564: warning: variable "ct" was declared but never referenced clock_t ct; ^ "./Union_test_absorption.c", line 1273: warning: variable "mcstartdate" was set but never used static long mcstartdate = 0; /* start simulation time */ ^ "./Union_test_absorption.c", line 2514: warning: function "strcpy_valid" was declared but never referenced static char *strcpy_valid(char *valid, char *original) ^ mcgenstate: 88, Generating acc routine seq Generating Tesla code particle_getvar: 102, Generating acc routine seq Generating Tesla code particle_setvar: 126, Generating acc routine seq Generating Tesla code particle_restore: 137, Generating acc routine seq Generating Tesla code particle_getuservar_byid: 145, Generating acc routine seq Generating Tesla code particle_uservar_init: 155, Generating acc routine seq Generating Tesla code noprintf: 1305, Generating acc routine seq Generating Tesla code str_comp: 1309, Generating acc routine seq Generating Tesla code str_len: 1318, Generating acc routine seq Generating Tesla code mcget_ncount: 3492, Generating acc routine seq Generating Tesla code coords_set: 3729, Generating acc routine seq Generating Tesla code coords_get: 3740, Generating acc routine seq Generating Tesla code coords_add: 3749, Generating acc routine seq Generating Tesla code coords_sub: 3761, Generating acc routine seq Generating Tesla code coords_neg: 3773, Generating acc routine seq Generating Tesla code coords_scale: 3783, Generating acc routine seq Generating Tesla code coords_sp: 3793, Generating acc routine seq Generating Tesla code coords_xp: 3801, Generating acc routine seq Generating Tesla code coords_len: 3811, Generating acc routine seq Generating Tesla code coords_print: 3833, Generating acc routine seq Generating Tesla code coords_norm: 3840, Generating acc routine seq Generating Tesla code rot_set_rotation: 3886, Generating acc routine seq Generating Tesla code rot_test_identity: 3921, Generating acc routine seq Generating Tesla code rot_mul: 3932, Generating acc routine seq Generating Tesla code rot_copy: 3949, Generating acc routine seq Generating Tesla code rot_transpose: 3960, Generating acc routine seq Generating Tesla code rot_apply: 3976, Generating acc routine seq Generating Tesla code vec_prod_func: 4005, Generating acc routine seq Generating Tesla code scalar_prod: 4016, Generating acc routine seq Generating Tesla code norm_func: 4020, Generating acc routine seq Generating Tesla code sort_absorb_last: 4055, Generating present(pbuffer[:1],particles[:1]) Generating Tesla code 4062, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */ 4071, #pragma acc loop seq 4055, Generating implicit copy(lens[:]) [if not already present] 4073, Accelerator restriction: induction variable live-out from loop: i 4074, Accelerator restriction: induction variable live-out from loop: i 4075, Accelerator restriction: induction variable live-out from loop: i 4076, Accelerator restriction: induction variable live-out from loop: i 4078, Accelerator restriction: induction variable live-out from loop: j 4079, Accelerator restriction: induction variable live-out from loop: j 4080, Accelerator restriction: induction variable live-out from loop: j 4081, Accelerator restriction: induction variable live-out from loop: j 4103, Generating present(pbuffer[:1]) Generating Tesla code 4107, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */ 4110, #pragma acc loop seq 4103, Generating implicit copyin(lens[:]) [if not already present] Generating implicit copy(particles[:]) [if not already present] Generating implicit copyin(los[:]) [if not already present] 4127, Generating present(particles[:1]) Generating Tesla code 4131, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */ 4138, #pragma acc loop seq 4127, Local memory used for targetbuffer,sourcebuffer mccoordschange: 4197, Generating acc routine seq Generating Tesla code mccoordschange_polarisation: 4228, Generating acc routine seq Generating Tesla code normal_vec: 4245, Generating acc routine seq Generating Tesla code solve_2nd_order: 4344, Generating acc routine seq Generating Tesla code _randvec_target_circle: 4428, Generating acc routine seq Generating Tesla code _randvec_target_rect_angular: 4494, Generating acc routine seq Generating Tesla code _randvec_target_rect_real: 4571, Generating acc routine seq Generating Tesla code kiss_srandom: 4843, Generating acc routine seq Generating Tesla code kiss_random: 4853, Generating acc routine seq Generating Tesla code _hash: 4879, Generating acc routine seq Generating Tesla code _randnorm2: 4920, Generating acc routine seq Generating Tesla code _randtriangle: 4931, Generating acc routine seq Generating Tesla code _rand01: 4936, Generating acc routine seq Generating Tesla code _randpm1: 4944, Generating acc routine seq Generating Tesla code _rand0max: 4952, Generating acc routine seq Generating Tesla code _randminmax: 4959, Generating acc routine seq Generating Tesla code mcsetstate: 5571, Generating acc routine seq Generating Tesla code inside_rectangle: 5663, Generating acc routine seq Generating Tesla code box_intersect: 5680, Generating acc routine seq Generating Tesla code cylinder_intersect: 5795, Generating acc routine seq Generating Tesla code sphere_intersect: 5850, Generating acc routine seq Generating Tesla code init: 31877, Generating update device(_cylinder_var,_a1_var,_screen_var,_absorber_material_var,_beam_center_var,_test_sample_var,_stop_var,_instrument_var,_source_var,_init_var) class_Progress_bar_trace: 31920, Generating acc routine seq Generating Tesla code class_Source_div_trace: 32008, Generating acc routine seq Generating Tesla code class_PSD_monitor_trace: 33680, Generating acc routine seq Generating Tesla code raytrace_all_funnel: 34064, Generating present(particles[:1]) Generating Tesla code 34068, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */ 34064, Local memory used for ..inline 34075, Generating present(particles[:1]) Generating Tesla code 34080, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */ 34075, Local memory used for ..inline,_particle_save 34168, Generating present(particles[:1]) Generating Tesla code 34171, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */ 34168, Local memory used for ..inline,_particle_save finally: 34976, Generating update self(_cylinder_var,_a1_var,_screen_var,_absorber_material_var,_beam_center_var,_stop_var,_test_sample_var,_instrument_var,_source_var,_init_var) INFO: ===