INFO: Using directory: "5" INFO: Using existing c-file: ./Test_SANS.c INFO: Using existing binary: ./Test_SANS.out INFO: === -------------------------------------------------------------------------- WARNING: Linux kernel CMA support was requested via the btl_vader_single_copy_mechanism MCA variable, but CMA support is not available due to restrictive ptrace settings. The vader shared memory BTL will fall back on another single-copy mechanism if one is available. This may result in lower performance. Local host: runnervm6qbrg -------------------------------------------------------------------------- Simulation 'Test_SANS' (Test_SANS.instr): running on 2 nodes (master is 'runnervm6qbrg', MPI version 3.1). [Test_SANS] Initialize [Test_SANS] Initialize SANSPDB: Sample7: Scattering from 3v03.pdb with 1160 residues SANSPDBFast: Sample11: Initializing scattering from 3v03.pdb with 1160 residues on 200 Q-values SANSPDBFast: Sample11: 3v03.pdb initialization I(q) done [runnervm6qbrg:23754] 1 more process has sent help message help-btl-vader.txt / cma-permission-denied [runnervm6qbrg:23754] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages *** TRACE end *** Save [Test_SANS] Detector: PSDMonitor_I=1.15196e-05 PSDMonitor_ERR=1.36097e-06 PSDMonitor_N=9670 "PSDMonitor.dat" Detector: QMonitor_I=0.00613582 QMonitor_ERR=0.000978063 QMonitor_N=14625 "RDetector.dat" Finally [Test_SANS: 5]. Time: 1 [s] Detector: QMonitor_I=0.0260328 QMonitor_ERR=0.00412416 QMonitor_N=14625 "QDetector.dat" Finally [Test_SANS: 5]. Time: 1 [s] INFO: Placing instr file copy Test_SANS.instr in dataset 5 INFO: Placing generated c-code copy Test_SANS.c in dataset 5