INFO: Using directory: "2" INFO: Using existing c-file: ./Test_SANS.c INFO: Using existing binary: ./Test_SANS.out INFO: === -------------------------------------------------------------------------- WARNING: Linux kernel CMA support was requested via the btl_vader_single_copy_mechanism MCA variable, but CMA support is not available due to restrictive ptrace settings. The vader shared memory BTL will fall back on another single-copy mechanism if one is available. This may result in lower performance. Local host: runnervm6qbrg -------------------------------------------------------------------------- Simulation 'Test_SANS' (Test_SANS.instr): running on 2 nodes (master is 'runnervm6qbrg', MPI version 3.1). [Test_SANS] Initialize [Test_SANS] Initialize SANSPDB: Sample7: Scattering from 3v03.pdb with 1160 residues SANSPDBFast: Sample11: Initializing scattering from 3v03.pdb with 1160 residues on 200 Q-values SANSPDBFast: Sample11: 3v03.pdb initialization I(q) done [runnervm6qbrg:23868] 1 more process has sent help message help-btl-vader.txt / cma-permission-denied [runnervm6qbrg:23868] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages *** TRACE end *** Save [Test_SANS] Detector: PSDMonitor_I=2.33861e-10 PSDMonitor_ERR=1.78742e-11 PSDMonitor_N=9670 "PSDMonitor.dat" Detector: QMonitor_I=9.37041e-08 QMonitor_ERR=1.07205e-08 QMonitor_N=14625 "RDetector.dat" Finally [Test_SANS: 2]. Time: 0 [s] Detector: QMonitor_I=3.97411e-07 QMonitor_ERR=4.54696e-08 QMonitor_N=14625 "QDetector.dat" Finally [Test_SANS: 2]. Time: 0 [s] INFO: Placing instr file copy Test_SANS.instr in dataset 2 INFO: Placing generated c-code copy Test_SANS.c in dataset 2