loading system configuration loading override configuration from /home/nexmap/pkwi/McCode/tools/Python/mctest/../mccodelib/mcstas-test/McStas_8GPU/mccode_config.json INFO: Using directory: "2" INFO: Using existing c-file: ./ESS_BEER_MCPL.c INFO: Using existing binary: ./ESS_BEER_MCPL.out INFO: === Simulation 'ESS_BEER_MCPL' (/home/nexmap/pkwi/TESTS/2022-10-01/McStas_8GPU_5e7/ESS_BEER_MCPL/ESS_BEER_MCPL.instr): running on 7 nodes (master is 'hypatia.fysik.dtu.dk', MPI version 3.1). Have found 7 GPU devices on rank 4. Will use device 4. Have found 7 GPU devices on rank 0. Will use device 0. Have found 7 GPU devices on rank 6. Will use device 6. Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 Have found 7 GPU devices on rank 2. Will use device 2. Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 Have found 7 GPU devices on rank 3. Will use device 3. Have found 7 GPU devices on rank 1. Will use device 1. Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 Have found 7 GPU devices on rank 5. Will use device 5. Using the input file: BEER_MCB.mcpl Using the sample file: duplex.laz INFO: Collimator radius=0.16, height=0.105744 -> 0.293308 Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV [ESS_BEER_MCPL] Initialize Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 x 7 MPI nodes = 560000 neutrons total Initialize ncount is 560000 Initiating file read... Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV [ESS_BEER_MCPL] Initialize Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV [ESS_BEER_MCPL] Initialize Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Initialize ncount is 560000 Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Initialize ncount is 560000 [ESS_BEER_MCPL] Initialize Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Initialize ncount is 560000 Initiating file read... Initiating file read... Initiating file read... Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 Opening input file '/u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../data/duplex.laz' (Table_Read_Offset) Table from file 'duplex.laz' (block 1) is 39 x 18 (x=1:7), constant step. interpolation: linear '# Duplex steel 0.5-alpha, 0.5-gamma, fake structure file normalized on alph ...' PowderN: sample: Reading 39 rows from duplex.laz PowderN: sample: Read 39 reflections from file 'duplex.laz' PowderN: sample: Vc=24.04 [Angs] sigma_abs=5.12 [barn] sigma_inc=0.8 [barn] reflections=duplex.laz PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV [ESS_BEER_MCPL] Initialize Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Initialize ncount is 560000 Initiating file read... Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV [ESS_BEER_MCPL] Initialize Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Initialize ncount is 560000 Initiating file read... Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 dhklmon: Modulation on, table = dhkl.tab, line shift=0 trying to read dhkl table [dhkl.tab] Error: Could not open input file 'dhkl.tab' (Open_File) WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] Error: Could not open input file 'dhkl.tab' (Open_File) Error: Could not open input file 'dhkl.tab' (Open_File) WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] Error: Could not open input file 'dhkl.tab' (Open_File) Error: Could not open input file 'dhkl.tab' (Open_File) Chopper delay = 4.72696, mod_period = 0.446429 [ms] Mean ToF [ms] = 80.8891 Selected energy range: 9.72702 to 67.6068 meV [ESS_BEER_MCPL] Initialize Message(src): MCPL file (BEER_MCB.mcpl) produced with SIMRES. Message(src): MCPL file (BEER_MCB.mcpl) contains 10000 particles. Initialize ncount is 560000 Initiating file read... Error: Could not open input file 'dhkl.tab' (Open_File) Done reading MCPL file, found 10000 neutrons Warning: You are using MCPL_input with a repeat_count of 50: - Minimum neutron count requested is 10000 x 50 <= 80000 neutrons total Initialize ncount is 80000 WARNING(sample): p_transmit=0, adjusting to 0.01, to avoid algorithm instability PowderN: Target direction = (4.32978e-17 -0.707107 0.707107) Exact_radial_coll: rad2: foil thickness is 0.1 [millimeter] opening each input slit [0.424:106] [millimeter] opening each output slit [1.57:293] [millimeter] divergence per channel is 9.78565 [min] Error: Could not open input file 'dhkl.tab' (Open_File) [hypatia:17524] *** Process received signal *** [hypatia:17524] Signal: Segmentation fault (11) [hypatia:17524] Signal code: Invalid permissions (2) [hypatia:17524] Failing at address: 0x7f4885828000 [hypatia:17524] *** End of error message *** [hypatia:17528] *** Process received signal *** [hypatia:17528] Signal: Segmentation fault (11) [hypatia:17528] Signal code: Invalid permissions (2) [hypatia:17528] Failing at address: 0x7fbfe1828000 [hypatia:17528] *** End of error message *** [hypatia:17534] *** Process received signal *** [hypatia:17534] Signal: Segmentation fault (11) [hypatia:17534] Signal code: Invalid permissions (2) [hypatia:17534] Failing at address: 0x7f39e5828000 [hypatia:17534] *** End of error message *** [hypatia:17526] *** Process received signal *** [hypatia:17526] Signal: Segmentation fault (11) [hypatia:17526] Signal code: Invalid permissions (2) [hypatia:17526] Failing at address: 0x7fd181828000 [hypatia:17526] *** End of error message *** [hypatia:17530] *** Process received signal *** [hypatia:17530] Signal: Segmentation fault (11) [hypatia:17530] Signal code: Invalid permissions (2) [hypatia:17530] Failing at address: 0x7f07e5828000 [hypatia:17530] *** End of error message *** [hypatia:17533] *** Process received signal *** [hypatia:17533] Signal: Segmentation fault (11) [hypatia:17533] Signal code: Invalid permissions (2) [hypatia:17533] Failing at address: 0x7f5b59828000 [hypatia:17533] *** End of error message *** [hypatia:17532] *** Process received signal *** [hypatia:17532] Signal: Segmentation fault (11) [hypatia:17532] Signal code: Invalid permissions (2) [hypatia:17532] Failing at address: 0x7f9f29828000 [hypatia:17532] *** End of error message *** /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 17530 Segmentation fault "$@" -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- /u/data/pkwi/McStas/mcstas/3.x-dev/tools/Python/mcrun/../mccodelib/../../../bin/acc_gpu_bind: line 12: 17533 Segmentation fault "$@" -------------------------------------------------------------------------- mpirun detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[45406,1],3] Exit code: 139 --------------------------------------------------------------------------